sct_flatten_sagittal

Flatten the spinal cord such within the medial sagittal plane. Useful to make nice pictures, but should not be used for quantitative analysis (eg: CSA computation) or for registration. Output data has suffix _flatten.

usage: sct_flatten_sagittal -i <file> -s <file> [-h] [-v <int>]

MANDATORY ARGUMENTS

-i

Input volume. Example: t2.nii.gz

-s

Spinal cord segmentation or centerline. Example: t2_seg.nii.gz

MISC ARGUMENTS

-v

Possible choices: 0, 1, 2

Verbosity. 0: Display only errors/warnings, 1: Errors/warnings + info messages, 2: Debug mode.

Default: 1