sct_compute_mtr¶

Compute magnetization transfer ratio (MTR). Output is given in percentage.

usage: sct_compute_mtr -mt0 <float> -mt1 <float> [-thr THR] [-o <str>] [-h]
                       [-v <int>]

MANDATORY ARGUMENTS¶

-mt0: Image without MT pulse (MT0)
-mt1: Image with MT pulse (MT1)

OPTIONAL ARGUMENTS¶

-thr

Threshold to clip MTR output values in case of division by small number. This implies that the output image range will be [-thr, +thr]. Default: 100.

Default: 100

-o

Path to output file.

Default: './mtr.nii.gz'

MISC ARGUMENTS¶

-v

Possible choices: 0, 1, 2

Verbosity. 0: Display only errors/warnings, 1: Errors/warnings + info messages, 2: Debug mode.

Default: 1